rs30473125 SNP Detail

Summary

• ID
  rs30473125
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:162692764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTG AGAATCTACA GCGCTCAGCC
  R
  CCCCATAAAT CCACACTGAG TGTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44932336	mCV23041822	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss145945116	ENSMUSSNP3609201	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30473125					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162692764 () rs orientation: forward

Symbol	Name	Function Class
Fmo1	flavin containing monooxygenase 1	Intron
Rr422026	regulatory region 422026	640 bp distal
Rr422027	regulatory region 422027	within coordinates
Rr422028	regulatory region 422028	1261 bp proximal
Rr422029	regulatory region 422029	1405 bp proximal
Tssr14673	transcription start site region 14673	1164 bp downstream
Tssr14674	transcription start site region 14674	1230 bp downstream
Tssr14675	transcription start site region 14675	1245 bp downstream
Tssr14676	transcription start site region 14676	1268 bp downstream
Tssr14677	transcription start site region 14677	1288 bp downstream
Tssr14678	transcription start site region 14678	1307 bp downstream