rs30462068 SNP Detail

Summary

• ID
  rs30462068
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120680965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATGAGGA GTGGCCAAAT
  AGATGGTTTG CAATATTTTT ATTTGTGGAA GATTGTTTCT GCCAATGAGC AGCACTGGCT
  GGAACAATGG CAGCAATTTG GGGTATTCTT TCTCCTCAGT TTGCTTTCTT TTCTCTTACT
  TCACTTTACA GCCTGTCCCA AGATTCACTT TGTCAGTGTG GAGAGATATT TACTCCTTTC
  R
  GTTCTACTTG GCTGGCTGTC TCACTCTAAA GTCACACAAG CCAGTTTGTC ATCAGCGCGG
  CCATGACTAA CCAGGCAGCA CACGGCTCTG TGGACTTCTC ACAGAACCAT CCCCACGGCC
  CAGGAGTCCA CTAAAAACAA GGAGCAACAC CCCTGAAGAA GGTCCCAGAG CAGAAGGCTT
  CCAGGGCTGG GAGAGTACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45433526	mCV24002920	ABI	CRAMUS_MOUSE	f	SNP		G	A					A
ss51608876	NES14656096	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		G	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30462068					SNP	G	G	A	A	A	A	A	A	G	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51608876	NES14656096	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120680965 () rs orientation: forward

Symbol	Name	Function Class
6530403H02Rik	RIKEN cDNA 6530403H02 gene	232 bp upstream
Rr583992	regulatory region 583992	755 bp distal
Rr583993	regulatory region 583993	328 bp distal
Tssr35394	transcription start site region 35394	570 bp upstream