rs30461890 SNP Detail

Summary

• ID
  rs30461890
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137721163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTCCCATA CCCTAAACTC
  AGGCCTCCAT TGTTATGAAT CTAGGCTATT CTTAGGAGAA AAGCAGAGAC AGAAAGTGGG
  GGTTACACTG TCCTCTCAAC TTAGGAGGAA AATATCTACA AATCAGAGCT AGACACTCAG
  ACCATCACCT CAGTCACTCA ACTGTGGTCC TTCATTCTCC ATCCAAGACA GATGAAGAGC
  M
  GGTATCTTAC CCTTGGAATC AATACCAAAT TGTCCACAGT TAACTCCACT GTGTAGAGCG
  ATAGAAGACA GCTATGTCTA CGGACTAACA TGGCTGGATC TAATAATGTT GCATGGTTAA
  GTGAAAGTTT TTCTGGCCTC ACCTGTAGGC ATCCTCTGGC AGGTATGTCC AATCTGTGGC
  CCATTGGCTG CATGGGGCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss45432566	mCV23058251	ABI	CRAMUS_MOUSE	f	SNP	C			A		A
ss46993429	NES10878420	PERLEGEN	MM_PANEL2	f	SNP	C	C	C		A	A		A		A
ss135946732	ENSMUSSNP578518	ENSEMBL	ENSEMBL_Sanger	f	SNP	C					A
ss320977718	CHEV_3_137678366	CHEVERUD	SCREENING_POP	f	SNP							C		A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs30461890					SNP	C	C	C	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46993429	NES10878420	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137721163 () rs orientation: forward

Symbol	Name	Function Class
Gm19708	predicted gene, 19708	within coordinates
Rr398067	regulatory region 398067	1700 bp upstream
Rr586058	regulatory region 586058	157 bp distal
Rr586059	regulatory region 586059	1321 bp proximal