rs30460916 SNP Detail

Summary

• ID
  rs30460916
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123181248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCA CAGTATTTAT GAAGTCAATG
  R
  GATCCATCAG AGAATTGTTG GATTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45432657	mCV23482651	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					A		G
ss51023240	NES13907530	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	G		G	G	A		A	A	G		G
ss135764398	ENSMUSSNP6850699	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
ss320919502	CHEV_3_123090517	CHEVERUD	SCREENING_POP	f	SNP												A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30460916					SNP	A	A	G	A	G	A	G	A	G	G	A	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51023240	NES13907530	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123181248 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	1531 bp distal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	1609 bp upstream
Rr397990	regulatory region 397990	1546 bp downstream
Rr584510	regulatory region 584510	1679 bp distal
Rr584511	regulatory region 584511	1001 bp distal
Tssr35499	transcription start site region 35499	1927 bp upstream
Tssr35500	transcription start site region 35500	1606 bp upstream
Tssr35501	transcription start site region 35501	1589 bp upstream