rs30458665 SNP Detail

Summary

• ID
  rs30458665
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32453191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGTG ATAACTTTTT AAAGCCAGCT
  Y
  ACTGTCTTAG TCTTCTCTAC TGAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45433486	mCV24283447	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss134749304	ENSMUSSNP7180783	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss320698070	CHEV_3_32297964	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30458665					SNP	C	C	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32453191 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13056	CpG island 13056			969 bp distal
Gm56797	predicted gene, 56797			1847 bp downstream
Pik3ca	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha			Intron
				Noncoding-Transcript-Variant
Rr397633	regulatory region 397633			1889 bp downstream
Rr574953	regulatory region 574953			1967 bp distal
Rr574954	regulatory region 574954			1361 bp distal
Rr574955	regulatory region 574955			1630 bp distal
Rr574956	regulatory region 574956			69 bp distal
Tssr28746	transcription start site region 28746			1955 bp downstream
Tssr28747	transcription start site region 28747			1898 bp downstream
Tssr28748	transcription start site region 28748			1863 bp downstream
Tssr28749	transcription start site region 28749			1777 bp downstream
Tssr28750	transcription start site region 28750			1746 bp downstream
Tssr28751	transcription start site region 28751			573 bp downstream
Tssr32929	transcription start site region 32929			816 bp upstream