rs30447631 SNP Detail

Summary

• ID
  rs30447631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116722748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACACTGTT TTAAGCTCCT
  TGAGCACTAT GCTCTTTTCT GAGTAGGAAG GAGAGATGGA CAAATGGACA AGATCCTAAT
  ATAACGGTCT CATTTTCTGT GGTGTGATAG TAGATACGCA TAGCCTGATA ATGTGCAAAG
  GAACTGACAA AGAGGTACAC TCATGGACTG TTCCACAGAC TCTGAACTCA TACCAGCATG
  Y
  GGATGAAGTT CAGGACTGTC TGCTCTGTGT GATTCCACAG ACCCTGGCAG CTGCAGTTAC
  CAAGGCTGGC TCTTCCAGCC ATGAACCATG TGTAGTCTTT GCCAGACACT CTGAGCTCAC
  AAGTCAGCTG CCTCGGAGGA CAGCTGATTT GACATGACAG CTGGTCCAAG AGACGCCAGC
  TGTGGATATT CATGTCAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J
ss45429892	mCV22284342	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss135675742	ENSMUSSNP1828866	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J
rs30447631					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116722748 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Palmd	palmdelphin			Intron
				Noncoding-Transcript-Variant
Rr583806	regulatory region 583806			within coordinates
Tssr1028	transcription start site region 1028			1824 bp upstream