rs30412272 SNP Detail

Summary

• ID
  rs30412272
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:156269010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGA GTGTTTGTCG GTGAAAGGTC
  Y
  CCCTAGCCTG TTTTCCTCAG AAGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45427930	mCV22727428	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	C
ss136128465	ENSMUSSNP3305900	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
ss321033465	CHEV_3_156226337	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30412272					SNP	C	C	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:156269010 () rs orientation: forward

Symbol	Name	Function Class
4930570G19Rik	RIKEN cDNA 4930570G19 gene	1627 bp upstream
Cpgi13974	CpG island 13974	739 bp distal
Negr1	neuronal growth regulator 1	Intron
Rr587959	regulatory region 587959	1731 bp distal
Rr587960	regulatory region 587960	1394 bp distal
Rr587961	regulatory region 587961	within coordinates
Rr587962	regulatory region 587962	1247 bp distal
Tssr32476	transcription start site region 32476	1504 bp downstream
Tssr32477	transcription start site region 32477	1380 bp downstream
Tssr32478	transcription start site region 32478	1240 bp downstream
Tssr32479	transcription start site region 32479	1177 bp downstream
Tssr32480	transcription start site region 32480	683 bp downstream
Tssr32481	transcription start site region 32481	577 bp downstream
Tssr36286	transcription start site region 36286	1598 bp upstream