rs30407464 SNP Detail

Summary

• ID
  rs30407464
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:83900573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTT AGGAACATTT GTGAACGATG
  Y
  AGCTGCCAGG ACACCAGGAT ACAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45426161	mCV25073411	ABI	CRAMUS_MOUSE	f	SNP		T	T					C
ss51569561	NES14675081	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	C	T	T		C	T	C		C	T	T		T
ss135419363	ENSMUSSNP6357332	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss320821993	CHEV_3_83797188	CHEVERUD	SCREENING_POP	f	SNP												C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30407464					SNP	T	T	T	C	C	T	T	C	C	T	C	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51569561	NES14675081	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83900573 () rs orientation: forward

Symbol	Name	Function Class
Rr578944	regulatory region 578944	862 bp distal
Rr578945	regulatory region 578945	within coordinates
Rr578946	regulatory region 578946	195 bp proximal
Rr578947	regulatory region 578947	774 bp proximal
Rr578948	regulatory region 578948	1994 bp proximal
Tmem131l	transmembrane 131 like	Intron