rs30406309 SNP Detail

Summary

• ID
  rs30406309
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:38942864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAA AGCCGGTGTT TAGCCAGCCT
  R
  AAGGTTATGA GGTGTCTGTG GTTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45425370	mCV24520058	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss134846159	ENSMUSSNP4154341	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320724106	CHEV_3_38787637	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30406309					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38942864 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	1754 bp upstream
Fat4	FAT atypical cadherin 4	Coding-NonSynonymous
Rr575721	regulatory region 575721	1765 bp distal
Rr575722	regulatory region 575722	932 bp distal
Rr575723	regulatory region 575723	811 bp distal
Rr575724	regulatory region 575724	662 bp distal
Rr575725	regulatory region 575725	within coordinates
Rr575726	regulatory region 575726	402 bp distal