rs30405750 SNP Detail

Summary

• ID
  rs30405750
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79124752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAACTCCAG TTACAAATGT CTGTGAGCCA CAGGGGATGC
  TGGGTAATGA ACTTTTTCCT CTGCAAGAAC AACAAGTTCT TAACTGCTCT TAACTGCTCA
  K
  TCATCTCACC AGCTGTTTCT TATATTTTAT AGATTTAAAT AGATGACAAA CTGTTGTTGT
  TCTTGTTCTT GTTGTTGTTT TTCCAGACAG GATTTCTCT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45424661	mCV23538076	ABI	CRAMUS_MOUSE	f	SNP	G	G	T
ss135368940	ENSMUSSNP1919631	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
ss320810462	CHEV_3_79021367	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30405750					SNP	G	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79124752 () rs orientation: forward

Symbol	Name	Function Class
4921511C10Rik	RIKEN cDNA 4921511C10 gene	within coordinates
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2	Intron
Rr375215	regulatory region 375215	426 bp upstream
Rr578485	regulatory region 578485	968 bp proximal