rs30405224 SNP Detail

Summary

• ID
  rs30405224
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138558025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAG GTAATTACTT CAGCCTACAA
  R
  GCCTGCCTTT TACAGCATGA AGTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss45426440	mCV23602374	ABI	CRAMUS_MOUSE	f	SNP	A	A	G				G
ss47001026	NES10875943	PERLEGEN	MM_PANEL2	f	SNP			G	G	G	G		G	G		A	A
ss135957687	ENSMUSSNP6210001	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss320981662	CHEV_3_138515228	CHEVERUD	SCREENING_POP	f	SNP										A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs30405224					SNP	A	A	G	G	G	G	G	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001026	NES10875943	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138558025 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr398073	regulatory region 398073			1755 bp upstream
Rr586211	regulatory region 586211			1798 bp distal
Rr586212	regulatory region 586212			within coordinates
Rr586213	regulatory region 586213			852 bp proximal
Rr586214	regulatory region 586214			1618 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant