rs30400311 SNP Detail

Summary

• ID
  rs30400311
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87823424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGA GTTCTAGGAA AATAAAGCCG
  Y
  TGATTACTAT CCTGATTCTG ACTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45424402	mCV23484514	ABI	CRAMUS_MOUSE	f	SNP		C	T		C
ss51575552	NES14667444	PERLEGEN	MM_PANEL2	f	SNP	C			T		T		T	T		T	T	T		T
ss135468756	ENSMUSSNP40419	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T				T
ss320835499	CHEV_3_87720039	CHEVERUD	SCREENING_POP	f	SNP										T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30400311					SNP	C	C	T	T	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51575552	NES14667444	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87823424 () rs orientation: forward

Symbol	Name	Function Class
Hdgf	heparin binding growth factor	mRNA-UTR
Rr579572	regulatory region 579572	1062 bp proximal
Tssr29850	transcription start site region 29850	1172 bp downstream
Tssr29851	transcription start site region 29851	1037 bp downstream
Tssr29852	transcription start site region 29852	1022 bp downstream
Tssr29853	transcription start site region 29853	934 bp downstream
Tssr29854	transcription start site region 29854	790 bp downstream
Tssr29855	transcription start site region 29855	605 bp downstream
Tssr29856	transcription start site region 29856	569 bp downstream
Tssr29857	transcription start site region 29857	545 bp downstream
Tssr29858	transcription start site region 29858	514 bp downstream
Tssr29859	transcription start site region 29859	482 bp downstream
Tssr29860	transcription start site region 29860	334 bp downstream
Tssr29861	transcription start site region 29861	312 bp downstream