rs30376943 SNP Detail

Summary

• ID
  rs30376943
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132389044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCAGGGCCC AGCACTTACA CAGGAGCACA CAATCACAGG
  TAACTCCAGG TCCCAGGGGT CTGATGCTTT CTAGCCTCCG CGTTTACCTC CACACAAGTT
  Y
  TGCACAAAAA CTCACTCGGG CATGAACACA TACCCATAAG TAAAACATAT CAATATTAAA
  ATACAGAGTG TTCACCTTAC TTTTAATGCT GTACTTCAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45423328	mCV22640748	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss135913728	ENSMUSSNP3892518	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30376943					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132389044 () rs orientation: forward

Symbol	Name	Function Class
Aimp1	aminoacyl tRNA synthetase complex-interacting multifunctional protein 1	Intron
Cpgi13843	CpG island 13843	441 bp proximal
Rr367561	regulatory region 367561	443 bp upstream
Rr585442	regulatory region 585442	within coordinates
Rr585443	regulatory region 585443	394 bp proximal
Rr585444	regulatory region 585444	591 bp proximal
Rr585445	regulatory region 585445	872 bp proximal
Tbck	TBC1 domain containing kinase	861 bp upstream
Tssr31756	transcription start site region 31756	823 bp upstream
Tssr31757	transcription start site region 31757	876 bp upstream
Tssr35732	transcription start site region 35732	541 bp downstream