rs30319446 SNP Detail

Summary

• ID
  rs30319446
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:42562656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACTCATATGA TTCATAGATG CCATGATTTT AAAAAGAAAC TCTTTCCCAA CTCTGTTTTT
  TGTTTTGTTT TTTTTTTTGT TTTTTTTTGT TTTTTTTTTT TGTTGTTGTT GTTTCTGTTT
  TTTTTTTTTT TTTTTTTTTC AAGACAGGGT TTCTCTGTGT AGCCCTGACT GTCCTGGAAC
  TCACTCTGTA GACCAGGCTG GCCTTGAACT CAGAAATTTG CCTGCCTCTG CCTCCCAAGT
  GCTGGGATTA AAGGCGTGCA CCACCACACC CAGCCCCAAC TCTGTTTTTG TCATGCATTA
  R
  AAAAGTGCAG TGATTGGCAG GTTTAATTAA ATCTTTAAGC ATATGTAGTA AAGTCACTGG
  ATTCAGCAAG TCAAGGGCTG TGGTTGACCA TTTGTGTATT CATGCTTAAA TTTGTGCTGG
  GGTATCAGGA TCTCTTGGCT GACAGCCCAT TTCAGCCATG TAGAGATGAA AGTCAGTTCT
  CAGTAGAAAA TTTTACAAAA CATAAAAACA TAAAGGATTA GTATATTCAT TCAGATAAGG
  ACAGTGGAGA CAGCACCCAA TGATCTATGT TATTGATTTA GTATTTTTTC ATTTTATGTG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45916165	mCV23761531	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30319446					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42562656 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr629347	regulatory region 629347			1915 bp distal
Tcaf3	TRPM8 channel-associated factor 3			Intron
				Noncoding-Transcript-Variant
Tssr56046	transcription start site region 56046			496 bp downstream
Tssr56047	transcription start site region 56047			347 bp downstream
Tssr56048	transcription start site region 56048			238 bp upstream
Tssr56049	transcription start site region 56049			288 bp upstream
Tssr60620	transcription start site region 60620			18 bp downstream
Tssr60621	transcription start site region 60621			36 bp downstream
Tssr60622	transcription start site region 60622			82 bp downstream
Tssr60623	transcription start site region 60623			138 bp downstream
Tssr60624	transcription start site region 60624			180 bp downstream
Tssr60625	transcription start site region 60625			248 bp downstream
Tssr60626	transcription start site region 60626			263 bp downstream
Tssr60627	transcription start site region 60627			279 bp downstream
Tssr60628	transcription start site region 60628			423 bp downstream
Tssr60629	transcription start site region 60629			478 bp downstream
Tssr60630	transcription start site region 60630			547 bp downstream
Tssr60631	transcription start site region 60631			591 bp downstream
Tssr60632	transcription start site region 60632			643 bp downstream
Tssr60633	transcription start site region 60633			669 bp downstream
Tssr60634	transcription start site region 60634			682 bp downstream
Tssr60635	transcription start site region 60635			748 bp downstream
Tssr60636	transcription start site region 60636			853 bp downstream
Tssr60637	transcription start site region 60637			1109 bp downstream
Tssr60638	transcription start site region 60638			1149 bp downstream
Tssr60639	transcription start site region 60639			1200 bp downstream
Tssr60640	transcription start site region 60640			1455 bp downstream