rs30315792 SNP Detail

Summary

• ID
  rs30315792
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138449693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGT GGCTGTTTGC TGTAGACATA
  M
  ACATCTGTGA GAATAGTTGT AGTTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss45417470	mCV23172535	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
ss135956724	ENSMUSSNP4346520	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320981115	CHEV_3_138406896	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs30315792					SNP	C	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138449693 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13879	CpG island 13879			341 bp distal
Rr367566	regulatory region 367566			662 bp downstream
Rr586188	regulatory region 586188			1727 bp distal
Rr586189	regulatory region 586189			within coordinates
Rr586190	regulatory region 586190			1579 bp distal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant
Tssr32003	transcription start site region 32003			1610 bp downstream
Tssr32004	transcription start site region 32004			1600 bp downstream
Tssr32005	transcription start site region 32005			335 bp upstream
Tssr32006	transcription start site region 32006			1945 bp upstream