rs30315365 SNP Detail

Summary

• ID
  rs30315365
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123179897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTGTTTT TCCTGCTCAT AAAAGAAGTT TTTCTTTTTC
  CCGTTAACCA ATTGTCCGCC TGCCAGTCCT GGCTTTTTAA TATTTGAGGG ATGCTTGTGG
  R
  TTTCTTTCAC TGCAATACTG ACCGGCTTGT GAAGGACTGG ATCGCCGCTC AGTAACCTTG
  GCAAGTTAGC GAGCTTTTGT AAAAGAACAG AGAAAGAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45418145	mCV23482665	ABI	CRAMUS_MOUSE	f	SNP		A					G		A
ss51023254	NES13907566	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A		A	A	G	G		A	G	G	A		G
ss320919496	CHEV_3_123089166	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30315365					SNP	G	A	G	A	G	A	G	A	A	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51023254	NES13907566	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123179897 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	180 bp distal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	258 bp upstream
Rr397990	regulatory region 397990	195 bp downstream
Rr584510	regulatory region 584510	328 bp distal
Rr584511	regulatory region 584511	within coordinates
Tssr35499	transcription start site region 35499	576 bp upstream
Tssr35500	transcription start site region 35500	255 bp upstream
Tssr35501	transcription start site region 35501	238 bp upstream