rs30312341 SNP Detail

Summary

• ID
  rs30312341
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87823664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGT ATTTTGTCCA CATATATGTG
  Y
  ACCACATGCA AGCCTGGTAC CTGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45418417	mCV23484504	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss135468759	ENSMUSSNP6497431	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss320835500	CHEV_3_87720279	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30312341					SNP	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87823664 () rs orientation: forward

Symbol	Name	Function Class
Hdgf	heparin binding growth factor	225 bp downstream
Rr579572	regulatory region 579572	822 bp proximal
Tssr29850	transcription start site region 29850	1412 bp downstream
Tssr29851	transcription start site region 29851	1277 bp downstream
Tssr29852	transcription start site region 29852	1262 bp downstream
Tssr29853	transcription start site region 29853	1174 bp downstream
Tssr29854	transcription start site region 29854	1030 bp downstream
Tssr29855	transcription start site region 29855	845 bp downstream
Tssr29856	transcription start site region 29856	809 bp downstream
Tssr29857	transcription start site region 29857	785 bp downstream
Tssr29858	transcription start site region 29858	754 bp downstream
Tssr29859	transcription start site region 29859	722 bp downstream
Tssr29860	transcription start site region 29860	574 bp downstream
Tssr29861	transcription start site region 29861	552 bp downstream