rs30311836 SNP Detail

Summary

• ID
  rs30311836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123178298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGGAACCC AAGATTTAGC AATGAGAAAT GACAGCGCTC
  TACCTTAACC ACTGAGCCAC CTCTCTCTCT AGCCCACCTT CACATTCTCG AGACTGGTGT
  Y
  GAAGGAAGTT TGTATTATTT TCTTGAGATC CTGGCGAGAA AGACTCATTG GAAATCTAAA
  ATTTACTCAC TCAAGCTTTG AGCATTTCCC TCCATTACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45417421	mCV23482936	ABI	CRAMUS_MOUSE	f	SNP	T
ss51023298	NES13907602	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	C		C	C	T		C
ss135764293	ENSMUSSNP5617301	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320919467	CHEV_3_123087567	CHEVERUD	SCREENING_POP	f	SNP								C				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30311836					SNP	T	C	C	C	T	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51023298	NES13907602	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123178298 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	1077 bp proximal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	Intron
Rr397990	regulatory region 397990	1103 bp upstream
Rr584510	regulatory region 584510	535 bp proximal
Rr584511	regulatory region 584511	1272 bp proximal
Tssr35499	transcription start site region 35499	1019 bp downstream
Tssr35500	transcription start site region 35500	1276 bp downstream
Tssr35501	transcription start site region 35501	1345 bp downstream