rs30309553 SNP Detail

Summary

• ID
  rs30309553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120679363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTAGAAGC CCAGGCCACC
  TGCAGTAGAG ACACGCTCTG AGGTTGTGCA GGACTCTGAG GAGAGGGGAC AGAAGGACAT
  GCCAATTCTA CCCCATAGCT CAGAGCGATG ATAAACATCT CCCAGAGAAG AGAAAGGTCA
  CCCTGGGAAC TGGCCAGTGT GAATGCTATT CCTTGGTGAC CTTTATCTTG CTCTGACATA
  Y
  GTGGTGAAGA TTCTCTGGAC GGAACGAACA TTACAACAAC TAAGGAAGGA GTAACATCAG
  GTCAGAGCCA GAAGCTACAT CTAGTCTGAA AGACCAGAAG AAAGCTTTTA TATCTTCGGT
  GTGATTTTTG TAATGAATAA AAAAGGAGAC ATTCCCCTCA CCTATATCCA ACAGTCAGAG
  GAAAATGTAA ACAGGTGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45416560	mCV24002957	ABI	CRAMUS_MOUSE	f	SNP		C	T						T
ss51608918	NES14656077	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	C	T	T	T	C	T	C	C
ss135709320	ENSMUSSNP6911231	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30309553					SNP	C	C	T	T	T	T	T	C	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51608918	NES14656077	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120679363 () rs orientation: forward

Symbol	Name	Function Class
6530403H02Rik	RIKEN cDNA 6530403H02 gene	within coordinates
Rr583990	regulatory region 583990	1676 bp distal
Rr583991	regulatory region 583991	1844 bp distal
Rr583992	regulatory region 583992	305 bp proximal
Rr583993	regulatory region 583993	848 bp proximal
Tssr35394	transcription start site region 35394	1014 bp downstream