rs30278281 SNP Detail

Summary

• ID
  rs30278281
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52666492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAGAGCA ACTGCTAGGA
  GACACCTTGG AGTTCAGATG TCACATCTCA ACAGGGATGC AGGTCAGTGG TAGAACATGT
  GCCTAGCATG CACATGACTG TGTTCCCACC TCAGCACCAG CAAGAAAAAT CACACGAGAA
  CGCCACAGCT GAATCTCATT TACACCAACC TTTAGTATAA TTTGAGCAAG CATTGCTTTC
  R
  AGTTCCACAA CACGTTATAA TTAAGCAATT AGAATGTAAG AAAGAAAGAA AGGAAATTTA
  ATAGAACAGG CATTTCATGT GTATTTTAGC CCAACAGCAG GCAGTGGTAT ACTGGGGTGA
  TTGATACACT TTAAATATTA TTAAGCAGCT TCACGGGGGG CCTCAGCCAG CCAGTAGATA
  GCAGCTTCTG CACTGGTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45559703	mCV23115206	ABI	CRAMUS_MOUSE	f	SNP		G	G					A		A
ss46931123	NES10797464	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	A	A	G		G	G	G		A
ss135178228	ENSMUSSNP2547741	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
ss320765096	CHEV_3_52562993	CHEVERUD	SCREENING_POP	f	SNP													G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30278281					SNP	G	G	G	G	G	G	G	A	G	A	A	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931123	NES10797464	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52666492 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576581	regulatory region 576581	63 bp distal
Rr576582	regulatory region 576582	301 bp distal