rs30277449 SNP Detail

Summary

• ID
  rs30277449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52664681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAACCAA CAACAACAAA
  ACCAGATTGC TGGCAAAGGT TACATTCTGT AGCGCATGCC GGGGTGGGGA TGGCGGTGGG
  CAACAAACAG CAGAAACAAT ACTAAGTAGT ACTTGGAAGG TAGTGTTGGT TTATAAAGTG
  TGGCATCATC CTTCTCTTTT GGTCATTGGA ATAGCCCTGT TTTGGGGTTA CTTGTGTTCT
  Y
  GGGGTTCAGA GGAACAGAGC TCCAGTTTGT ATCGGGGTCT CCTGAGTATG GGTTCTGTGT
  ACTTTGTATG ACAAAATCTT TGACGCTGTA GTCAGAGACC ACTTGATCCT TGACCTCAGG
  ACTATTTCAT GACATTTCTA GTGTAGATTT TGTTATGCTT GGGGAAGTTT TAGTTTAAGC
  CTTCCCCCAA ATAGAGAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46931111	NES10797577	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	T	T	C		C	C	C	C		T
ss135178223	ENSMUSSNP725409	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss320765094	CHEV_3_52561182	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30277449					SNP	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931111	NES10797577	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52664681 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	1858 bp distal
Rr576581	regulatory region 576581	1358 bp proximal
Rr576582	regulatory region 576582	1489 bp proximal