rs30277240 SNP Detail

Summary

• ID
  rs30277240
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52661171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGCCTGA GAACCTGAGT
  TCCATCCTCG AGACCCACAT AGGAGAGAGA AATGACTGCT GAAAGTTTTC CTCTGATCTC
  CACACCTATA CCTCAGAATG CACATGAGTG TGGGCACACA AACACACACA CACACACACA
  CACACACACA CACACACACA CACATACATA GAGTAATGAT TTTAAAAAAT TAAAGCATTT
  M
  GTTAATGTAT ACTCTGGGTT TTCCTTCTGA AAAAGACAAG ATATAGCCTC AGCAGTCTAG
  AGCATGAGAC CTGAAGGGCT GGTCCTAGAG AGGCTCCTTC AAGCTTTTTG AGCAAACTGC
  ACTGTTAGCA CTAAAGGTAG GTGTGAGTGT GCAAGCGTGT ATGTGAGCGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45565848	mCV23179615	ABI	CRAMUS_MOUSE	f	SNP		A			C	C
ss46931015	NES10797818	PERLEGEN	MM_PANEL2	f	SNP	A		C	A		C	C	A		A	A	A		C
ss320765058	CHEV_3_52557672	CHEVERUD	SCREENING_POP	f	SNP									A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30277240					SNP	A	A	C	A	C	C	C	A	A	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931015	NES10797818	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52661171 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	698 bp proximal
Tssr33262	transcription start site region 33262	1295 bp downstream