rs30277238 SNP Detail

Summary

• ID
  rs30277238
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52660682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGGAGCA TCCCTTGAAG
  GAAGTCCAGG AAAAACAAGA GATATACACA TACCCCACTG AGGGCAGAGG GCCCCTGAGG
  AGGCCGGGGC TCAGGCACAC AAGGGCTGCC TGCCCACCTT TTTATCATCA GCACCCAAAT
  GACTCCTCTT CTTCTTTAAT GGTGAGAGCC TGCAACGTTG ATATGTCCCA CTTTATTATA
  K
  TCTGCTCACT GTGGAATCTT TTTTAAAAAC ATATTTTTAA AAATTAATTA ATTAATTTTT
  AGTACTGTAG CTGTCTTCAG ACACACCAGA ACAGGTTACT GGATCCCATA ACAAATGGTT
  GAGAGTCACC CTGTGGTTGC TGGGGATTGA ACTCAGGACC TCTGGAAGAG CAGTCAGTAC
  TCTTAACTGC TGAGCCAGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46931012	NES10797896	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30277238					SNP	G	G	G	G	G	G	T	G	G	G	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931012	NES10797896	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52660682 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	1187 bp proximal
Tssr33262	transcription start site region 33262	1784 bp downstream