rs30277235 SNP Detail

Summary

• ID
  rs30277235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52660657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGGCTAG CATTCCTCCA
  GAGACACTGG GAGCATCCCT TGAAGGAAGT CCAGGAAAAA CAAGAGATAT ACACATACCC
  CACTGAGGGC AGAGGGCCCC TGAGGAGGCC GGGGCTCAGG CACACAAGGG CTGCCTGCCC
  ACCTTTTTAT CATCAGCACC CAAATGACTC CTCTTCTTCT TTAATGGTGA GAGCCTGCAA
  Y
  GTTGATATGT CCCACTTTAT TATAGTCTGC TCACTGTGGA ATCTTTTTTA AAAACATATT
  TTTAAAAATT AATTAATTAA TTTTTAGTAC TGTAGCTGTC TTCAGACACA CCAGAACAGG
  TTACTGGATC CCATAACAAA TGGTTGAGAG TCACCCTGTG GTTGCTGGGG ATTGAACTCA
  GGACCTCTGG AAGAGCAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46931009	NES10797894	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30277235					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931009	NES10797894	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52660657 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	1212 bp proximal
Tssr33262	transcription start site region 33262	1809 bp downstream