rs30276560 SNP Detail

Summary

• ID
  rs30276560
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52664094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTCCAGT ACTCCGACAA
  AATCCCCTGA TTAATGAACT CAGAGTGAAG GAGGGTTTGT TTTCATTTTG TCTCACAGTT
  ATGGAGATTT CAGACTGTGA CCAATTGGCT CCGATGGTTT GGAGCTGTGG TAAGGAGGGT
  GTGGTAGAAT AAACTATTTA CCCCATGGCT GGACTGAAAA AGCACAAGAA GGGCAATCGC
  K
  AGTGGTCAGA AGTGGTTCCC ACCTTTTAAA GATTCCACTA CCTCCCAAGA GCACCATGGG
  TCACTTTGCT AAGCCGTAGA CATCCTCCGT GCCCAGGTCT GCACCTCTAT AGGAAGAGGC
  GGAAATGTAC CCTGCACGTG GTTCCCACCT CTTCCCTCCT CTTCAGACCA CACCTTCTTC
  CCTGCTGGGA AGCTTCTGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46931102	NES10797619	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	G	G	T		T	T	T	T		T
ss135178206	ENSMUSSNP2057453	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						G
ss320765090	CHEV_3_52560595	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30276560					SNP	T	T	T	T	T	T	T	G	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931102	NES10797619	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52664094 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	1271 bp distal
Rr576581	regulatory region 576581	1945 bp proximal
Tssr33262	transcription start site region 33262	1617 bp upstream