rs30276389 SNP Detail

Summary

• ID
  rs30276389
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52660332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGTGGGA ACCACTGAAG
  TCTCATTGAA TTTGGGTCCT GCATGTCTGA CCTGAATTTC CAAAGAAGAA ATTAATATCC
  TGGAAGTTGT TAGAGGGTTC TCCCGGAAAT ATTCGGTACA GAATTCTTAG AAAACACTCT
  CAGGGTATCA GTCCTCCACC AAGTAGACTT GACTGTGGTC AAGTCCACAT ATCCTCATCA
  M
  CTAGGGATGA AGTTCTTGGT GACTGAACTT GACCGCTAAA GGGGTAGAAA GCCACCACTC
  ATGGCCATCT CTGCAATCAG CTTCTGGGGG ATTTGATGAT CATGTGGCTT TCACTGGGGT
  GAACAGGTGG CTAGCATTCC TCCAGAGACA CTGGGAGCAT CCCTTGAAGG AAGTCCAGGA
  AAAACAAGAG ATATACACAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45559312	mCV23179602	ABI	CRAMUS_MOUSE	f	SNP	A	A				C	C
ss46931003	NES10797891	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A		C	A		C	A	C	C		C
ss135178164	ENSMUSSNP1737531	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					C
ss320765044	CHEV_3_52556833	CHEVERUD	SCREENING_POP	f	SNP									A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30276389					SNP	A	A	A	A	A	C	C	A	A	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931003	NES10797891	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52660332 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	1537 bp proximal