rs30273758 SNP Detail

Summary

• ID
  rs30273758
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52666865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGATAGC AGCTTCTGCA
  CTGGTGTTTA AGACACATGG GCCCTCAACT TCTTTTTCTG GCTTTTCCAA TGGCCAATGG
  AGAAACAAGA CACACTGGCT CGGCAAGAAC AAGAGACAGC ACTGAAATCA GCATCTAAGA
  GTTCAGTATA CTCTGGGACC ATCAAATGTA GATGACTAAC ATATCTCTTC TGCCAGAAAG
  K
  TCTCAAGCCT TTGGGAAACC AAGGAAACCT GCAGCTTCCC TGTATGTAGG CTTCACTGTG
  CAGGAGGCAG CAGCACACAC TCGGGGAAGG GCCCAGACCA TAAAGGAGCT TGGGTTCCAA
  GGTCACTTTG CCTTCTACTA GCCATGACAG TTTGATCATT CACTGTGTTC CATTTTTCTC
  GTTTGAAATA AATTCTCATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46931138	NES10797477	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30273758					SNP	T	T	T	T	T	T	G	T	T	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931138	NES10797477	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52666865 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576581	regulatory region 576581	436 bp distal
Rr576582	regulatory region 576582	674 bp distal