rs30273722 SNP Detail

Summary

• ID
  rs30273722
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52662850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACTGCTG TGGGCTTGTC
  TCTCTCAGAA ATCTGTGAGG AAACAGTCCT GGTACTCCCT AGCATTATCA TGTTCTCTGT
  CAGGTTCATG GGGTGTCTGT AGTTTGTTCC TGTAAAGCAG GGTAGGCCAC TGTTTATCTG
  CCCCGGGATC TTTACAATCC AAAACTGATA GCACAGTTTA TACCAGGGTG ATGGAGAATA
  Y
  GTCCAGGAGA ACAGGCTTTA TAAACACCCA GTCAATACCG AGCAAAGGAC AGGTGCTGTT
  TGCAAGACCC TGAAGACTGC ACTCTTTAGG CAGAGGGTCA GAACACTAGG CATGCCATGT
  TCCAGTGAGG GTCCAGTGTC CTGACGGCAG GGCTGGAGCT AAGTCACCAA GCCAAGGATT
  ACACCCAAAT TGGTTATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46931072	NES10797704	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30273722					SNP	C	C	T	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931072	NES10797704	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52662850 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	27 bp distal
Tssr33262	transcription start site region 33262	373 bp upstream