rs30273719 SNP Detail

Summary

• ID
  rs30273719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52662793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCGAGAC ATCGGGTCAG
  AGCAGGTCAG GAAATACCCA CTAAATCAGA TTAGCTGCAC ACTGCTGTGG GCTTGTCTCT
  CTCAGAAATC TGTGAGGAAA CAGTCCTGGT ACTCCCTAGC ATTATCATGT TCTCTGTCAG
  GTTCATGGGG TGTCTGTAGT TTGTTCCTGT AAAGCAGGGT AGGCCACTGT TTATCTGCCC
  Y
  GGGATCTTTA CAATCCAAAA CTGATAGCAC AGTTTATACC AGGGTGATGG AGAATACGTC
  CAGGAGAACA GGCTTTATAA ACACCCAGTC AATACCGAGC AAAGGACAGG TGCTGTTTGC
  AAGACCCTGA AGACTGCACT CTTTAGGCAG AGGGTCAGAA CACTAGGCAT GCCATGTTCC
  AGTGAGGGTC CAGTGTCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46931069	NES10797703	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T	C	C	C	T		C	T	C	C		C
ss320765079	CHEV_3_52559294	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30273719					SNP	T	C	T	T	T	T	C	C	C	T	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931069	NES10797703	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52662793 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	within coordinates
Tssr33262	transcription start site region 33262	316 bp upstream