rs30273202 SNP Detail

Summary

• ID
  rs30273202
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52666754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAACAGGC ATTTCATGTG
  TATTTTAGCC CAACAGCAGG CAGTGGTATA CTGGGGTGAT TGATACACTT TAAATATTAT
  TAAGCAGCTT CACGGGGGGC CTCAGCCAGC CAGTAGATAG CAGCTTCTGC ACTGGTGTTT
  AAGACACATG GGCCCTCAAC TTCTTTTTCT GGCTTTTCCA ATGGCCAATG GAGAAACAAG
  M
  CACACTGGCT CGGCAAGAAC AAGAGACAGC ACTGAAATCA GCATCTAAGA GTTCAGTATA
  CTCTGGGACC ATCAAATGTA GATGACTAAC ATATCTCTTC TGCCAGAAAG TTCTCAAGCC
  TTTGGGAAAC CAAGGAAACC TGCAGCTTCC CTGTATGTAG GCTTCACTGT GCAGGAGGCA
  GCAGCACACA CTCGGGGAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46931132	NES10797474	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30273202					SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931132	NES10797474	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52666754 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576581	regulatory region 576581	325 bp distal
Rr576582	regulatory region 576582	563 bp distal