rs30273196 SNP Detail

Summary

• ID
  rs30273196
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52666707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATAATTAA GCAATTAGAA
  TGTAAGAAAG AAAGAAAGGA AATTTAATAG AACAGGCATT TCATGTGTAT TTTAGCCCAA
  CAGCAGGCAG TGGTATACTG GGGTGATTGA TACACTTTAA ATATTATTAA GCAGCTTCAC
  GGGGGGCCTC AGCCAGCCAG TAGATAGCAG CTTCTGCACT GGTGTTTAAG ACACATGGGC
  Y
  CTCAACTTCT TTTTCTGGCT TTTCCAATGG CCAATGGAGA AACAAGACAC ACTGGCTCGG
  CAAGAACAAG AGACAGCACT GAAATCAGCA TCTAAGAGTT CAGTATACTC TGGGACCATC
  AAATGTAGAT GACTAACATA TCTCTTCTGC CAGAAAGTTC TCAAGCCTTT GGGAAACCAA
  GGAAACCTGC AGCTTCCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46931126	NES10797469	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30273196					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931126	NES10797469	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52666707 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576581	regulatory region 576581	278 bp distal
Rr576582	regulatory region 576582	516 bp distal