rs30273104 SNP Detail

Summary

• ID
  rs30273104
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52662325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGCCTC ACTGGAAAGA
  CTTGACTTCC AGCACACAGG GAGGGAGGTG GGACTCTGAC TTCTACAGTC CATTTGGCTT
  TGCTTCCCTT TGAAGCCATT ATTGAGAAGC TTTCCGAGCA CGGATCTGCA AACACAGACA
  CCAAGGAATC CTGGGCCCAG AGTTCAAACA AAAGTGTAAG GACAAGTGAG GTGAACGGTA
  W
  TGAGATCCCA CGTAGACCTC TCCTATTCAA AGCAGTCCTT CCTTGTCCTC ACCCTTTGGA
  GAACGTTTGA AATGATGGAA GTTGTATTTG AGCCTCCACT CTGAATGCTT CTGCAGGGTA
  GAGGTTCCTC CGCGGAGCTT GTGAGGGTTA ACTGAAGCAA CAACCTCTTT TATGTCTTTA
  CAAGTAGTCT GTTCTCCATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46931054	NES10797772	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	A	A	A	T	T	A		A		A	A	A		T
ss135178184	ENSMUSSNP2993829	ENSEMBL	ENSEMBL_Sanger	f	SNP		T										A
ss320765075	CHEV_3_52558826	CHEVERUD	SCREENING_POP	f	SNP										A						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30273104					SNP	A	T	A	A	A	A	T	T	A	A	A	A	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931054	NES10797772	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52662325 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	within coordinates
Tssr33262	transcription start site region 33262	141 bp downstream