rs30271736 SNP Detail

Summary

• ID
  rs30271736
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52662102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGCGATA AACCTCCAGA
  GTGCATGTCA CAGCCCCAAG TGACCCTGGT TGTGTCAGCA GCTCCACTGG GTGTATGACC
  TTTGGCACAA ATAAAATGTA TTTACTCATG CCTGAATTCC AGTGACAAGT CCCCTTAGAT
  AAAGCTCCAC TAGGGGCCAC CTGCCCTCAA TGACCTGCAA GGCTTTCAGG ACCAGCTTTC
  S
  TGCTCTGCGC ACCTCCTACC GAGGGCTGCC TCACTGGAAA GACTTGACTT CCAGCACACA
  GGGAGGGAGG TGGGACTCTG ACTTCTACAG TCCATTTGGC TTTGCTTCCC TTTGAAGCCA
  TTATTGAGAA GCTTTCCGAG CACGGATCTG CAAACACAGA CACCAAGGAA TCCTGGGCCC
  AGAGTTCAAA CAAAAGTGTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46931036	NES10797765	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	C	C	C	C	G	G	C		C		C	C	C		G
ss135178172	ENSMUSSNP5564589	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G					C
ss320765072	CHEV_3_52558603	CHEVERUD	SCREENING_POP	f	SNP											C						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30271736					SNP	C	G	C	C	C	C	C	G	G	C	C	C	C	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931036	NES10797765	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52662102 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	within coordinates
Tssr33262	transcription start site region 33262	364 bp downstream