rs30270823 SNP Detail

Summary

• ID
  rs30270823
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52661961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAATGGCA ATAAAAAGGA
  GAAAGGGAGG AGGAGGAAGG AGGAGCACGG TACAGTGGCA TGAGGCACCA TTCTGCATTG
  TTAAGGTTCT AAACCCCAAA TTTCCAAAAG GAGGAATTTC AGTGTCACTT GCTCCCCAGC
  CCATGGCGAT AAACCTCCAG AGTGCATGTC ACAGCCCCAA GTGACCCTGG TTGTGTCAGC
  M
  GCTCCACTGG GTGTATGACC TTTGGCACAA ATAAAATGTA TTTACTCATG CCTGAATTCC
  AGTGACAAGT CCCCTTAGAT AAAGCTCCAC TAGGGGCCAC CTGCCCTCAA TGACCTGCAA
  GGCTTTCAGG ACCAGCTTTC GTGCTCTGCG CACCTCCTAC CGAGGGCTGC CTCACTGGAA
  AGACTTGACT TCCAGCACAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46931033	NES10797764	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	C	C	C	A	A	C		C	C	C	C		A
ss320765070	CHEV_3_52558462	CHEVERUD	SCREENING_POP	f	SNP										C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30270823					SNP	C	A	C	C	C	C	A	A	C	C	C	C	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931033	NES10797764	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52661961 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	within coordinates
Tssr33262	transcription start site region 33262	505 bp downstream