rs30270814 SNP Detail

Summary

• ID
  rs30270814
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52661521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAAGCGTG TATGTGAGCG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGCTGC ACCCTACCCC ACAACATATT
  GCTCTGATTA TAAAGAGCTA CTGTATTTTT TGCTTTGGGA ACCAAACTAA CTACCTACTA
  TCTTAGGATA TGAACTTTTA TTTCCATGGG ATATTTACTC CAAATGATCA TTTGTTTAAC
  M
  CACTGAACTA CACAGATCAC AAGAAGGTAG TATTCATGGT TAACATCTTG CTGGGAACAA
  TACTAAGAAA ATATGTTTTC TAAGAGTGAG TGTATAAAAC AGGTAGAAAA ATAGAAGCAA
  ATTACCTTAA GTAAAAATGG TGAGAGGGGG GTGGAGGCAG CATCTAGGTT TAGGTGAGAG
  ACATAATTCT AACTGCACAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46931024	NES10797761	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	A	A	C	C	A		A	A	A		C
ss320765064	CHEV_3_52558022	CHEVERUD	SCREENING_POP	f	SNP									A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30270814					SNP	A	C	A	A	A	C	C	A	A	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931024	NES10797761	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52661521 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	348 bp proximal
Tssr33262	transcription start site region 33262	945 bp downstream