rs30263256 SNP Detail

Summary

• ID
  rs30263256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120680505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGAGGCT TTAATTTGAC
  TCTGCTTCCC TTTGCAGCTT GCGTGTCTCT CCCATGTCTG CCACCGCAGC AGGAGCTTAA
  AAGAACAGAG GAGGAGGAAG GAGCTCTCGT GAGAACCCCG GGAGTTTTGG CAGAACCTTT
  GTGGGAACCA TATGGCGGCA ACTTTACAGT ACATGAAACA TTTTGAAGTG AGGAAGACAC
  Y
  ACTATTTCCC AAAGAATGTC CCTTGTGTGT CTCAGTCGGA TTGAGGACCT CTGCCAAAGG
  ACAAGAATAA GACTTTCTGG AAACTTAGTG CGAACATAGA TGATATCTAA CTTTGATATA
  TCACAGGTCA GCATTATAGC CAGAATAGAT CTTACTAATT TAAATTAATG AAAAAAGAAT
  GTGCAATATT TCTCATACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45412897	mCV24002943	ABI	CRAMUS_MOUSE	f	SNP	T	C					C		C
ss51608891	NES14656091	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C		T	C	C	C	C	C	T	T
ss135709335	ENSMUSSNP5819147	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30263256					SNP	T	C	C	C	C	C	C	T	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51608891	NES14656091	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120680505 () rs orientation: forward

Symbol	Name	Function Class
6530403H02Rik	RIKEN cDNA 6530403H02 gene	within coordinates
Rr583992	regulatory region 583992	295 bp distal
Rr583993	regulatory region 583993	within coordinates
Tssr35394	transcription start site region 35394	110 bp upstream