rs30257144 SNP Detail

Summary

• ID
  rs30257144
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151000835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCAAAGT TAAAAGTTGC
  CATTGCAGTT ACTGTCGGAC CAAAGTAACC CCTGAGAACT CTCCACATTT GTAAAACGGA
  CTGAAAGGTT CAGTGGCGTT TCCCACCTGG AACAGGACTA GTAATGCTTT GAACGTGAAG
  AGGTATTAAT GGCCACTTGC CCTTTAAACC ACAGAGGGAC AGCTGAGCAC AGTGACCTTC
  Y
  AGCCCAACTT GAGAGAAGCA GGAAATGGGG TCTGAGGCTG AAGGTTCAGA TGATAAAATG
  CCCCTCGGGA AGATAACGAA ATGCTTCATC CGATGGTGGC CCAAGACACC TCTTAAAATC
  TAAGGAAATC GTTTCCCTTT TAAAAAGCTG CTTTGTGGAA ATAACAAGTG AGATCTTTTC
  CTGCTGTTTG TCTCTCTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45410939	mCV23511307	ABI	CRAMUS_MOUSE	f	SNP	T	C					T		T
ss47460106	NES10334802	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	C		T	T	T	C		C	T	T	T		T
ss136092106	ENSMUSSNP7187375	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
ss321024916	CHEV_3_150958162	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30257144					SNP	T	C	T	C	T	C	T	T	T	T	C	C	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47460106	NES10334802	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151000835 () rs orientation: forward

Symbol	Name	Function Class
4930555A03Rik	RIKEN cDNA 4930555A03 gene	within coordinates
Rr587386	regulatory region 587386	752 bp distal
Rr587387	regulatory region 587387	619 bp distal
Rr587388	regulatory region 587388	within coordinates
Tssr1093	transcription start site region 1093	669 bp downstream
Tssr1094	transcription start site region 1094	652 bp downstream
Tssr32380	transcription start site region 32380	1020 bp downstream
Tssr32381	transcription start site region 32381	980 bp downstream
Tssr32382	transcription start site region 32382	955 bp downstream