rs30241220 SNP Detail

Summary

• ID
  rs30241220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121436691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGAGGTGGG AAAAGGGGGA GGGATTTGAT GGGCAAGGAG
  GGATGCACTC AGCCTATATA GATCCATACC AAAACTCAAA ATTAACTTTT AGAAAGCCAA
  Y
  GATGTCAAAG GCACATTAGA AGTTTGACTG GAACTGATGC CTTGTCAATA AAACTATATC
  AGCTTTGTAA AAATGATATG ACTTAAGTGT ACAATCAAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45481708	mCV23896185	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					C		T
ss46928721	NES10693472	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		T		C		T	C	C	T
ss135725805	ENSMUSSNP3133509	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
ss320904487	CHEV_3_121345960	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30241220					SNP	C	C	C	C	C	C	C	C	T	T	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46928721	NES10693472	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121436691 () rs orientation: forward

Symbol	Name	Function Class
A730020M07Rik	RIKEN cDNA A730020M07 gene	within coordinates
Rr584136	regulatory region 584136	155 bp proximal
Rr584137	regulatory region 584137	353 bp proximal