rs30234746 SNP Detail

Summary

• ID
  rs30234746
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121438789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTTATTTCA GAGAGAGACC AAAGGCCCCC ATAGGTAGCT
  CCTCGCTAAT TCTCAGCACC ATTTAGAATC CATTGGCACA TGCATCATTC ATTGCTTCTG
  Y
  TTCTGCACTT GTACAATTCA CCACTTAAAC CCTTCAGTGT AAGCTCCTCG TTTGTAGAAT
  TCTGAAGGTG GCTCCACAGA GGCCCTTCCT GATGACCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss46928736	NES10693376	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T		C	T	T
ss320904496	CHEV_3_121348058	CHEVERUD	SCREENING_POP	f	SNP									T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30234746					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46928736	NES10693376	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121438789 () rs orientation: forward

Symbol	Name	Function Class
A730020M07Rik	RIKEN cDNA A730020M07 gene	within coordinates
Rr584136	regulatory region 584136	1746 bp distal
Rr584137	regulatory region 584137	1327 bp distal
Rr584138	regulatory region 584138	185 bp proximal