rs30233810 SNP Detail

Summary

• ID
  rs30233810
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121437378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTTTGATT AATTTCAATT TTAATAACAT TTCTTCACTT
  CTTTCCAGTT TTTTTTCCAG CACATAGCAG TAGTGATATG ACTGCCGATA AATCTCACAA
  M
  GAGCTCTGGC AGGGACTTTT AGTGGGTGTG AGCTCTGTGG AAAACTCTGA TGACCTATGC
  TAATGAAAAG TTCAATTACA AGGAAATGTT ATCATTCTC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45530395	mCV23896160	ABI	CRAMUS_MOUSE	f	SNP	A	A	C				C	A
ss46928730	NES10693440	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C			C		C	C	A
ss135725826	ENSMUSSNP2754880	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C					A
ss320904492	CHEV_3_121346647	CHEVERUD	SCREENING_POP	f	SNP										C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30233810					SNP	A	A	C	C	C	C	C	A	C	C	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46928730	NES10693440	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121437378 () rs orientation: forward

Symbol	Name	Function Class
A730020M07Rik	RIKEN cDNA A730020M07 gene	within coordinates
Rr584136	regulatory region 584136	335 bp distal
Rr584137	regulatory region 584137	within coordinates
Rr584138	regulatory region 584138	1596 bp proximal