rs30233807 SNP Detail

Summary

• ID
  rs30233807
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121437329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTCCCAG GCAGACACTC
  CACAAAGCTT TGGCTTGCTG GCCACAAGGG CATCAAGGAC ATCGCACCCA CAGGAGTCTG
  GCCTTTCACT AATTCATTTC CAGCTGAGAA GCAGCTTCGG CATCTGGTTG ATTTTCAATT
  CTGTCTTAGC TTTTTGATTA ATTTCAATTT TAATAACATT TCTTCACTTC TTTCCAGTTT
  Y
  TTTTCCAGCA CATAGCAGTA GTGATATGAC TGCCGATAAA TCTCACAACG AGCTCTGGCA
  GGGACTTTTA GTGGGTGTGA GCTCTGTGGA AAACTCTGAT GACCTATGCT AATGAAAAGT
  TCAATTACAA GGAAATGTTA TCATTCTCTT AACTAAGAAA CTGTATGGAG GTTGTGTGTG
  TGCAAATGTA TGTGTGTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45409389	mCV23896161	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T		T
ss46928727	NES10693435	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		T	T	T	T	T	T	T	T
ss135725822	ENSMUSSNP6390416	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30233807					SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46928727	NES10693435	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121437329 () rs orientation: forward

Symbol	Name	Function Class
A730020M07Rik	RIKEN cDNA A730020M07 gene	within coordinates
Rr584136	regulatory region 584136	286 bp distal
Rr584137	regulatory region 584137	within coordinates
Rr584138	regulatory region 584138	1645 bp proximal