rs30233804 SNP Detail

Summary

• ID
  rs30233804
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121436842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACTATATC AGCTTTGTAA AAATGATATG ACTTAAGTGT
  ACAATCAATA TTCATGAATT AATAAATGCC ATATATGAGT TGAAGTCAGA GTCATCTTGC
  R
  TGAGATACTT ACGCACCGTG CTGTATCTTC TCCTATGGGG ATGGATGCTG TCTTAACTCG
  CACGTGGTTC AGCCTTGCAC GCAGCACGCA CTCAGCTAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss45448490	mCV23896172	ABI	CRAMUS_MOUSE	f	SNP	G	G	G				G		A
ss46928724	NES10693473	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G		A		G		A	G	A
ss135725817	ENSMUSSNP5901095	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
ss320904491	CHEV_3_121346111	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs30233804					SNP	G	G	G	G	G	G	G	A	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46928724	NES10693473	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121436842 () rs orientation: forward

Symbol	Name	Function Class
A730020M07Rik	RIKEN cDNA A730020M07 gene	within coordinates
Rr584136	regulatory region 584136	4 bp proximal
Rr584137	regulatory region 584137	202 bp proximal