rs30225098 SNP Detail

Summary

• ID
  rs30225098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:42562637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAATACAAGA CAATTTTACA CTCATATGAT TCATAGATGC CATGATTTTA AAAAGAAACT
  CTTTCCCAAC TCTGTTTTTT GTTTTGTTTT TTTTTTTGTT TTTTTTTGTT TTTTTTTTTT
  GTTGTTGTTG TTTCTGTTTT TTTTTTTTTT TTTTTTTTCA AGACAGGGTT TCTCTGTGTA
  GCCCTGACTG TCCTGGAACT CACTCTGTAG ACCAGGCTGG CCTTGAACTC AGAAATTTGC
  CTGCCTCTGC CTCCCAAGTG CTGGGATTAA AGGCGTGCAC CACCACACCC AGCCCCAACT
  Y
  TGTTTTTGTC ATGCATTAGA AAAGTGCAGT GATTGGCAGG TTTAATTAAA TCTTTAAGCA
  TATGTAGTAA AGTCACTGGA TTCAGCAAGT CAAGGGCTGT GGTTGACCAT TTGTGTATTC
  ATGCTTAAAT TTGTGCTGGG GTATCAGGAT CTCTTGGCTG ACAGCCCATT TCAGCCATGT
  AGAGATGAAA GTCAGTTCTC AGTAGAAAAT TTTACAAAAC ATAAAAACAT AAAGGATTAG
  TATATTCATT CAGATAAGGA CAGTGGAGAC AGCACCCAAT GATCTATGTT ATTGATTTAG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45908799	mCV23761532	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30225098					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42562637 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr629347	regulatory region 629347			1896 bp distal
Rr629348	regulatory region 629348			1995 bp distal
Tcaf3	TRPM8 channel-associated factor 3			Intron
				Noncoding-Transcript-Variant
Tssr56046	transcription start site region 56046			477 bp downstream
Tssr56047	transcription start site region 56047			328 bp downstream
Tssr56048	transcription start site region 56048			257 bp upstream
Tssr56049	transcription start site region 56049			307 bp upstream
Tssr60620	transcription start site region 60620			37 bp downstream
Tssr60621	transcription start site region 60621			55 bp downstream
Tssr60622	transcription start site region 60622			101 bp downstream
Tssr60623	transcription start site region 60623			157 bp downstream
Tssr60624	transcription start site region 60624			199 bp downstream
Tssr60625	transcription start site region 60625			267 bp downstream
Tssr60626	transcription start site region 60626			282 bp downstream
Tssr60627	transcription start site region 60627			298 bp downstream
Tssr60628	transcription start site region 60628			442 bp downstream
Tssr60629	transcription start site region 60629			497 bp downstream
Tssr60630	transcription start site region 60630			566 bp downstream
Tssr60631	transcription start site region 60631			610 bp downstream
Tssr60632	transcription start site region 60632			662 bp downstream
Tssr60633	transcription start site region 60633			688 bp downstream
Tssr60634	transcription start site region 60634			701 bp downstream
Tssr60635	transcription start site region 60635			767 bp downstream
Tssr60636	transcription start site region 60636			872 bp downstream
Tssr60637	transcription start site region 60637			1128 bp downstream
Tssr60638	transcription start site region 60638			1168 bp downstream
Tssr60639	transcription start site region 60639			1219 bp downstream
Tssr60640	transcription start site region 60640			1474 bp downstream