rs30207012 SNP Detail

Summary

• ID
  rs30207012
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:65174741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATT TAAGTAGAGA GAGTAGTAAT
  R
  GTCTCCCATC CAAGTGCTAA CCAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39657838	mCV25191720	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss147305474	ENSMUSSNP412050	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30207012					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65174741 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm41756	predicted gene, 41756			within coordinates
Gm56499	predicted gene, 56499			964 bp upstream
Nedd4l	neural precursor cell expressed, developmentally down-regulated gene 4-like			Intron
				Noncoding-Transcript-Variant
Rr539431	regulatory region 539431			975 bp distal
Rr539432	regulatory region 539432			784 bp distal
Rr539433	regulatory region 539433			1192 bp proximal
Rr539434	regulatory region 539434			1833 bp proximal
Tssr153684	transcription start site region 153684			960 bp upstream
Tssr153685	transcription start site region 153685			929 bp upstream