rs30204294 SNP Detail

Summary

• ID
  rs30204294
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120680024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCTGGGAT GCAGCTCCCT
  GCGAAGCAGA AGGGACTCCA AACAACCCTA GTAGTGTAAA GAAGAGAAGA AGCCGGTCCA
  GCAGCAGCTC AGGCACAGAG CCTGTTCCCA GTCTCCCACC TGCCAGAACA CATAGCCAGA
  GTGGTGGTAT CCCTATAAGG CACTCCGCTC CACATGCTGG TAAGTTGTTT CTGTGGACTC
  Y
  GGGTCACTTC TAGGTACCAC GCCCTTTTCC CTACACAGTC AAAACCCCTG AAGACTTCTC
  CTAAACTCTC AGCTCACCCA CCACCACCCC CCTCTGTCAC CCAACCCGGG CCTTGCAACA
  GACGAATTGT AACTTGCCTT CTGCTTCGCC TCCAGCTTCT GCAAAATACA GTGACTTCCA
  CGGGCTCTCT TCCAGACAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45405897	mCV24002945	ABI	CRAMUS_MOUSE	f	SNP	C	T					T		T
ss51608897	NES14656089	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T		T	T	T	T	T	T	T	T	C
ss135709329	ENSMUSSNP4739341	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30204294					SNP	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51608897	NES14656089	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120680024 () rs orientation: forward

Symbol	Name	Function Class
6530403H02Rik	RIKEN cDNA 6530403H02 gene	within coordinates
Rr583992	regulatory region 583992	within coordinates
Rr583993	regulatory region 583993	187 bp proximal
Tssr35394	transcription start site region 35394	353 bp downstream