rs30202514 SNP Detail

Summary

• ID
  rs30202514
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120680916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCACCACC CACCACCCCT
  CCACCCCGCA AAAACACAGT TTACTCGTCT TAATGAGGAG TGGCCAAATA GATGGTTTGC
  AATATTTTTA TTTGTGGAAG ATTGTTTCTG CCAATGAGCA GCACTGGCTG GAACAATGGC
  AGCAATTTGG GGTATTCTTT CTCCTCAGTT TGCTTTCTTT TCTCTTACTT CACTTTACAG
  Y
  CTGTCCCAAG ATTCACTTTG TCAGTGTGGA GAGATATTTA CTCCTTTCAG TTCTACTTGG
  CTGGCTGTCT CACTCTAAAG TCACACAAGC CAGTTTGTCA TCAGCGCGGC CATGACTAAC
  CAGGCAGCAC ACGGCTCTGT GGACTTCTCA CAGAACCATC CCCACGGCCC AGGAGTCCAC
  TAAAAACAAG GAGCAACACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45404147	mCV24002921	ABI	CRAMUS_MOUSE	f	SNP		T	C					C
ss51608879	NES14656095	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		T	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30202514					SNP	T	T	C	C	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51608879	NES14656095	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120680916 () rs orientation: forward

Symbol	Name	Function Class
6530403H02Rik	RIKEN cDNA 6530403H02 gene	183 bp upstream
Rr583992	regulatory region 583992	706 bp distal
Rr583993	regulatory region 583993	279 bp distal
Tssr35394	transcription start site region 35394	521 bp upstream