rs30200271 SNP Detail

Summary

• ID
  rs30200271
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:76751667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGAGTGA TGGGAAACTC
  TGGGGGTTCG GAAACATTAA TTATTCTGAT AGAATTTATA CCTTAGGGAG GGAGTGTCCG
  TGGATTTCAA AGCAACGAGC AGCTAGCTGA ATTTGAGTTT TCCCTGATTT TTCAGAATGG
  AGGCTCCTTC CTTTCAGCTG ACAGAGTCAG CAGCTGTCAT AGGACAGGTT GCCTTGGTGC
  R
  CCATGCTTCA GCAGTTTGTA GATAGATGCT AAGTGTCAGT TGAATGTCTG GGGAAGGGAA
  CTGAAGGACC ACTACCAAGA CTTGTTTAAA AAAAAAAATC TGGGCACCTA AAACAGAAAA
  CTTTCATGCA CAAAACCCAA AACTTAGGTT TCTTAGCCAA GGCTCTTTTT TTTTTTTTTT
  TTTTTTTTTG CTGTGGACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ
ss39161627	mCV23494528	ABI	CRAMUS_MOUSE	f	SNP		A	G		G		G
ss49233184	NES12520061	PERLEGEN	MM_PANEL2	f	SNP	A		G	G		G		G
ss139757434	ENSMUSSNP7070830	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ
rs30200271					SNP	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49233184	NES12520061	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:76751667 () rs orientation: forward

Symbol	Name	Function Class
4930444M15Rik	RIKEN cDNA 4930444M15 gene	331 bp downstream
E130202H07Rik	RIKEN cDNA E130202H07 gene	1531 bp upstream
Gm63554	predicted gene, 63554	within coordinates
Rr389872	regulatory region 389872	633 bp upstream
Rr495676	regulatory region 495676	567 bp distal
Rr495677	regulatory region 495677	within coordinates
Tssr126731	transcription start site region 126731	1715 bp upstream
Tssr126732	transcription start site region 126732	1749 bp upstream
Tssr129811	transcription start site region 129811	1258 bp downstream
Tssr129812	transcription start site region 129812	1293 bp downstream