rs30199407 SNP Detail

Summary

• ID
  rs30199407
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:154427521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATGAAAT CTTATTTGGG
  TGGCCTAGCA AACAACACAT GGGGTGGACC AAGAATGCAG ACCCCACAGC TAGCTGAGGA
  GGGTGCTACT GGACAGGTGT TATTTTGTGT ATACACTGAT CCTGGGTCTC TGTTGAGACA
  CTGAATAATC TTACATAACA GCTTGGAATG GGGACTTAAA TAATGGATTC TGTCCCTGCT
  R
  TAATGTAGTC TCCCCTTAGC TTGATCAGTC TGAGAGAACT GTTCAAGACT GAAGAGTGGC
  TTTGTTAGGA GCTACCATGA GGTGCAGCAG CCAGAGGGAT TTATCCAGGC TATCAAAGAT
  CTGTCTTCAG TGGTGTGTGA TTCTGTGAAA CGAGAATAGG TTTTAGGTTT CCGTAGAGAA
  TAAATAAAAG CATCCGTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45404220	mCV22840614	ABI	CRAMUS_MOUSE	f	SNP		A					G		A
ss47477732	NES10331297	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A		A	A	A		A	A	A
ss136118392	ENSMUSSNP2156226	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30199407					SNP	G	A	G	A	G	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47477732	NES10331297	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154427521 () rs orientation: forward

Symbol	Name	Function Class
Erich3	glutamate rich 3	Intron
Rr587891	regulatory region 587891	1241 bp proximal
Rr587892	regulatory region 587892	1601 bp proximal