rs30177003 SNP Detail

Summary

• ID
  rs30177003
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:81964202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAC AAAGCGGCTT TTGTCCCTGC
  R
  GGCAAGCAAG CACAGCCACT GTTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45903077	mCV23926370	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	G
ss133338823	ENSMUSSNP3539350	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			G
ss321840805	CHEV_6_81937215	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30177003					SNP	A	A	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:81964202 () rs orientation: forward

Symbol	Name	Function Class
Gm20383	predicted gene, 20383	within coordinates
Gm44202	predicted gene, 44202	446 bp upstream
Rr632571	regulatory region 632571	within coordinates
Rr632572	regulatory region 632572	43 bp distal
Rr632573	regulatory region 632573	355 bp proximal