rs30169333 SNP Detail

Summary

• ID
  rs30169333
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:42562568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCTTCTTTTT TTTTTTTTAA TAGCTTGTCA ACTTTTATTT ACAGAGTCCC ATATGTGTGA
  AGATAATGCT AATACAAGAC AATTTTACAC TCATATGATT CATAGATGCC ATGATTTTAA
  AAAGAAACTC TTTCCCAACT CTGTTTTTTG TTTTGTTTTT TTTTTTGTTT TTTTTTGTTT
  TTTTTTTTTG TTGTTGTTGT TTCTGTTTTT TTTTTTTTTT TTTTTTTCAA GACAGGGTTT
  CTCTGTGTAG CCCTGACTGT CCTGGAACTC ACTCTGTAGA CCAGGCTGGC CTTGAACTCA
  R
  AAATTTGCCT GCCTCTGCCT CCCAAGTGCT GGGATTAAAG GCGTGCACCA CCACACCCAG
  CCCCAACTCT GTTTTTGTCA TGCATTAGAA AAGTGCAGTG ATTGGCAGGT TTAATTAAAT
  CTTTAAGCAT ATGTAGTAAA GTCACTGGAT TCAGCAAGTC AAGGGCTGTG GTTGACCATT
  TGTGTATTCA TGCTTAAATT TGTGCTGGGG TATCAGGATC TCTTGGCTGA CAGCCCATTT
  CAGCCATGTA GAGATGAAAG TCAGTTCTCA GTAGAAAATT TTACAAAACA TAAAAACATA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45901825	mCV23761540	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs30169333					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42562568 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr629347	regulatory region 629347			1827 bp distal
Rr629348	regulatory region 629348			1926 bp distal
Tcaf3	TRPM8 channel-associated factor 3			Intron
				Noncoding-Transcript-Variant
Tssr56046	transcription start site region 56046			408 bp downstream
Tssr56047	transcription start site region 56047			259 bp downstream
Tssr56048	transcription start site region 56048			326 bp upstream
Tssr56049	transcription start site region 56049			376 bp upstream
Tssr60620	transcription start site region 60620			106 bp downstream
Tssr60621	transcription start site region 60621			124 bp downstream
Tssr60622	transcription start site region 60622			170 bp downstream
Tssr60623	transcription start site region 60623			226 bp downstream
Tssr60624	transcription start site region 60624			268 bp downstream
Tssr60625	transcription start site region 60625			336 bp downstream
Tssr60626	transcription start site region 60626			351 bp downstream
Tssr60627	transcription start site region 60627			367 bp downstream
Tssr60628	transcription start site region 60628			511 bp downstream
Tssr60629	transcription start site region 60629			566 bp downstream
Tssr60630	transcription start site region 60630			635 bp downstream
Tssr60631	transcription start site region 60631			679 bp downstream
Tssr60632	transcription start site region 60632			731 bp downstream
Tssr60633	transcription start site region 60633			757 bp downstream
Tssr60634	transcription start site region 60634			770 bp downstream
Tssr60635	transcription start site region 60635			836 bp downstream
Tssr60636	transcription start site region 60636			941 bp downstream
Tssr60637	transcription start site region 60637			1197 bp downstream
Tssr60638	transcription start site region 60638			1237 bp downstream
Tssr60639	transcription start site region 60639			1288 bp downstream
Tssr60640	transcription start site region 60640			1543 bp downstream